rs255713394 SNP Detail

Summary

• ID
  rs255713394
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:178164296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGAGCTTC CGCCCCGCTC
  CCCGCGCCTG CCGCCGGAAG TGACGTCACC ACGAGCCCCT GCGCTCCTTG CACAATACCG
  CGGCGCTAAG CCGCCAAAGC CCGCCCGCTC CGGGACCTTC GGGCTTCTCC CCTCCCCCCA
  CCGCCGACAT GTGCCCGGAC CGCGCGCACG CAGCGCCCCA GCGGCCGGCG CTCCCGCCCG
  G
  CCGGCCCCCC CACCGCGGCA GCTGCAGCGC TCCCCCCACC CCGGCGCCCG ACATACATAA
  TGGAGGCGCC GCCGGCATGG CGAGCAGAGC CTCCCGGGGC TCCCCCGCCC CCACCCTCCC
  GCGGCGCTCG CCCCGAGGGG CCCCGGCAGG CCTGGGGCAC GGTCCCCACC GCCACGCGCA
  CCCATCACGC AACACTCACC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352535466	MGP_WTSI_1_180266862	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255713394					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352535466	MGP_WTSI_1_180266862	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:178164296 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1090	CpG island 1090	within coordinates
Hnrnpu	heterogeneous nuclear ribonucleoprotein U	within coordinates
Rr29068	regulatory region 29068	within coordinates
Rr372516	regulatory region 372516	331 bp upstream
Tssr316	transcription start site region 316	338 bp downstream
Tssr317	transcription start site region 317	856 bp downstream
Tssr318	transcription start site region 318	1073 bp downstream
Tssr10384	transcription start site region 10384	808 bp downstream
Tssr10385	transcription start site region 10385	594 bp downstream
Tssr10386	transcription start site region 10386	517 bp downstream
Tssr10387	transcription start site region 10387	351 bp upstream
Tssr10388	transcription start site region 10388	561 bp upstream
Tssr10389	transcription start site region 10389	1139 bp upstream
Tssr10390	transcription start site region 10390	1240 bp upstream
Tssr10391	transcription start site region 10391	1463 bp upstream
Tssr15481	transcription start site region 15481	638 bp upstream
Tssr15482	transcription start site region 15482	567 bp upstream
Tssr15483	transcription start site region 15483	323 bp upstream
Tssr15484	transcription start site region 15484	369 bp downstream
Tssr15485	transcription start site region 15485	428 bp downstream
Tssr15486	transcription start site region 15486	509 bp downstream
Tssr15487	transcription start site region 15487	560 bp downstream
Tssr15488	transcription start site region 15488	917 bp downstream
Tssr15489	transcription start site region 15489	942 bp downstream
Tssr15490	transcription start site region 15490	975 bp downstream
Tssr15491	transcription start site region 15491	1009 bp downstream
Tssr15492	transcription start site region 15492	1043 bp downstream