rs255716874 SNP Detail

Summary

• ID
  rs255716874
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126626462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGGTGGG GGAGCGGCGC
  ACACTGCGCG CCGGAGGGCG GGCGGGGGGC GCGAGGACAC ACAAGAGGCT GGAGCGGGCG
  CGAGCGCGAG TGCGCGCGGG GCCAGCGGGA GGGGGAGGGA CAGGAGGGAC TCTAGAGGGC
  GGAGGGACTG GGGAGCCACC CAGCAGCCCC GGTCGCCCCG AGCGCGAGAC CCCCAAGACG
  S
  TTGCTGATTG GCTGGCGATG GTGCAGGTGG TGGGCGCGCG GGAGACTAGG CGGCTTCTCT
  TCCCCCACTT GAACGATTCC ACCCCCCACT TCCCTCCGCC AGCGGCCGTT ATTTCGCGCG
  CACGCGCACA TAACAGGGAC GTCGTTGCTG AGCGGGAGAG TGGGGAGCGC GCCGAGGGAG
  TTACAGCGGG GCGGGGCTAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373079249	MGP_WTSI_7_134170804	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255716874					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373079249	MGP_WTSI_7_134170804	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126626462 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19727	CpG island 19727	within coordinates
Gm31749	predicted gene, 31749	within coordinates
Kif22	kinesin family member 22	439 bp downstream
Maz	MYC-associated zinc finger protein (purine-binding transcription factor)	285 bp upstream
Rr370584	regulatory region 370584	within coordinates
Rr655675	regulatory region 655675	within coordinates
Rr655676	regulatory region 655676	691 bp proximal
Tssr74908	transcription start site region 74908	1726 bp upstream
Tssr74909	transcription start site region 74909	1438 bp upstream
Tssr74910	transcription start site region 74910	1401 bp upstream
Tssr74911	transcription start site region 74911	1336 bp upstream
Tssr74912	transcription start site region 74912	1147 bp upstream
Tssr74913	transcription start site region 74913	1044 bp upstream
Tssr74914	transcription start site region 74914	1009 bp upstream
Tssr74915	transcription start site region 74915	980 bp upstream
Tssr74916	transcription start site region 74916	946 bp upstream
Tssr74917	transcription start site region 74917	865 bp upstream
Tssr74918	transcription start site region 74918	816 bp upstream
Tssr74919	transcription start site region 74919	794 bp upstream
Tssr74920	transcription start site region 74920	749 bp upstream
Tssr74921	transcription start site region 74921	682 bp upstream
Tssr74922	transcription start site region 74922	652 bp upstream
Tssr74923	transcription start site region 74923	510 bp upstream
Tssr74924	transcription start site region 74924	463 bp upstream
Tssr74925	transcription start site region 74925	265 bp upstream
Tssr74926	transcription start site region 74926	235 bp upstream
Tssr74927	transcription start site region 74927	93 bp upstream
Tssr74928	transcription start site region 74928	830 bp downstream