rs255724117 SNP Detail

Summary

• ID
  rs255724117
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174127420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAG GGCTCTTCAA GTCTCTCCAG
  R
  GCACCCAGGG GCGCTTGGGA GGCCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320627358	CHEV_2_174111128	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255724117					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174127420 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12855	CpG island 12855	within coordinates
Gm56457	predicted gene, 56457	981 bp upstream
Gnas	GNAS complex locus	within coordinates
Gnasas1	GNAS antisense RNA 1	within coordinates
Rr41274	regulatory region 41274	1420 bp distal
Rr56204	regulatory region 56204	within coordinates
Rr56205	regulatory region 56205	1780 bp proximal
Rr374310	regulatory region 374310	1329 bp upstream
Tssr789	transcription start site region 789	1390 bp downstream
Tssr790	transcription start site region 790	1334 bp downstream
Tssr22087	transcription start site region 22087	1301 bp downstream
Tssr22088	transcription start site region 22088	1002 bp downstream
Tssr22089	transcription start site region 22089	343 bp downstream
Tssr22090	transcription start site region 22090	308 bp downstream
Tssr22091	transcription start site region 22091	263 bp downstream
Tssr28006	transcription start site region 28006	443 bp upstream
Tssr28007	transcription start site region 28007	531 bp downstream