rs255727021 SNP Detail

Summary

• ID
  rs255727021
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110975404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGCAGGT AACCTTGCCA
  AGTCCATAAT GCTTGGAAGG GTGAGGTGAG AGCTGGAATC CCCATAGTTC CTGACCTCTT
  AGAGGTGTGG ATGCTATCAT CGAGGGCCTC TAGTTACTTC AGGTGATATC TGAGACAGGA
  GAAGAAAGAG GAATTAACCA ACTCAAGCTA GTAGTTTGCA GATAGGGGCT AGTTTTGTTC
  Y
  CTGGGATGTT TGGCAATGTC TGTGGACATG TGTGCCTGCC ACAGTGAAGG GCGGCAATGG
  GGAAGGTGCC CGGGCAATGT GGGCAGAGGC TGAGGATGTT GCTAAACTTG CAGTGCACAG
  CAAAAGCATG CTTAGCAGGG ATGCGGCTGA GAGCCCTGAT GATAGACTCT CATGCATTAT
  GTTTTGGAGC ATTAGTCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323195920	CHEV_9_111048840	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255727021					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110975404 () rs orientation: forward

Symbol	Name	Function Class
Lrrfip2	leucine rich repeat (in FLII) interacting protein 2	within coordinates
Rr687307	regulatory region 687307	1297 bp distal
Tssr87483	transcription start site region 87483	359 bp upstream
Tssr87484	transcription start site region 87484	1697 bp upstream