rs255727450 SNP Detail

Summary

• ID
  rs255727450
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116549903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTACTTTG AGTTTCTAAT
  ATCTAATATG CACTGGTGAG CACACTTAAA GCACATTGAC TTTTTTGTTT GTTTGCTTGT
  TTTTTTTTTG TTTTTTTGGT TTTTCGAGAC AGGGTTTCTC TGTATAGCCC TGGCTGTCCT
  GGAGCTCACT TTGTAGACCA GGCTGGCCTC GAACTCAGAA ATCTGCCTGC CTCTGCCTCC
  Y
  GAGTGCTGGG ATTAAAGGCG TGCGCCACCA CGCCCAGCTA CATTGACTTT TACTATTGGA
  AAAAGTTGAC GTTTTTGGAT AAAGTTAGAT AAAGAGTTTT TAGAAAGGTG AGGATAGGTC
  TGGTTTTCTT CACAAAGATT TGAATGGTTG TATTTTAAGA CACTCTTTTG CTCTAGGATT
  AACACACCCA AGAAACAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321277799	CHEV_4_116365311	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255727450					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116549903 () rs orientation: forward

Symbol	Name	Function Class
Prdx1	peroxiredoxin 1	within coordinates
Tssr38558	transcription start site region 38558	1647 bp downstream
Tssr38559	transcription start site region 38559	807 bp downstream
Tssr38560	transcription start site region 38560	769 bp downstream
Tssr38561	transcription start site region 38561	1013 bp upstream
Tssr38562	transcription start site region 38562	1111 bp upstream
Tssr38563	transcription start site region 38563	1241 bp upstream
Tssr38564	transcription start site region 38564	1374 bp upstream
Tssr38565	transcription start site region 38565	1405 bp upstream