rs255734328 SNP Detail

Summary

• ID
  rs255734328
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:16238267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTTTGTTT GTTTTCCCCT TAGGTGTTCC
  CTTGATGTGA TTTTTTTTTA AAAAAAACTG TAAGCGGTTT CTTTCTTGTT TTTGCACTTC
  TTTCTAAATA TAAAGGATAG AAAAACATCC AACGCAGCTA ACAGACAACA TTTACTTAGC
  Y
  CCTGGGTTTG TAGAAACCGA AGTACTAAGA AGAAACAGCT GTCTTGGTTG TATTTCAATG
  AACGTAATGT TATTTCTTCA GTTTACCATT TATGTTTGTT ACATAACTTA GGTCATACTT
  TTTTCTACAT TTGTGTATAG TTGGATAAGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320670521	CHEV_3_16084103	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255734328					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16238267 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12993	CpG island 12993			180 bp distal
Gm64384	predicted gene, 64384			385 bp upstream
Rr397612	regulatory region 397612			818 bp downstream
Rr573790	regulatory region 573790			857 bp distal
Rr573791	regulatory region 573791			396 bp distal
Rr573792	regulatory region 573792			within coordinates
Tssr833	transcription start site region 833			485 bp upstream
Tssr28473	transcription start site region 28473			897 bp downstream
Tssr28474	transcription start site region 28474			823 bp downstream
Tssr28475	transcription start site region 28475			795 bp downstream
Tssr28476	transcription start site region 28476			226 bp downstream
Tssr32661	transcription start site region 32661			416 bp upstream
Tssr32662	transcription start site region 32662			259 bp upstream
Ythdf3	YTH N6-methyladenosine RNA binding protein 3			Intron
				Noncoding-Transcript-Variant