rs255739722 SNP Detail

Summary

• ID
  rs255739722
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:158796111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CATTATTCC AAATTTTACC TAAAAAGGAG
  GAATCCAGAT CTAAAAACCT TAATATACAC AGTAAACAAA TTAGCAATAA GGGATAAATT
  TAAAAAAAAA AAACTCATTG TTCCACCATT CTTTGATAAA GGAAGTCAAT CTTTTTCGTT
  Y
  GAAAGAACTG TTTTTAACTG AAAATGGGGT CAAACAGAGA GAATGATACC TAGGGTCACA
  ATCAAAGTTG GTCAACATAG TAAGTGTCTC AGCCGCCTCT GCTAAAAGAT TGATCTGTTG
  CTGTAATGGC AAAACTGCCC TGTGTAAATA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320076734	CHEV_1_160898672	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255739722					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:158796111 () rs orientation: forward

Symbol	Name	Function Class
1600012P17Rik	RIKEN cDNA 1600012P17 gene	within coordinates
Rr25255	regulatory region 25255	1 bp proximal
Tssr9608	transcription start site region 9608	1269 bp upstream
Tssr14503	transcription start site region 14503	59 bp upstream
Tssr14504	transcription start site region 14504	285 bp downstream
Tssr14505	transcription start site region 14505	966 bp downstream
Tssr14506	transcription start site region 14506	1147 bp downstream
Tssr14507	transcription start site region 14507	1159 bp downstream
Tssr14508	transcription start site region 14508	1202 bp downstream