rs255742760 SNP Detail

Summary

• ID
  rs255742760
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:30825368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCCCCTC TTCCGCAGAC
  TCACTTCCTC GCTTCAAGAC CTTCACCCCA AGTTAAAAGT TCTTTGCTTC ACCACTGGGT
  TAGAGGCCTC TGGTCCCTCT TTCACCCACT TACCTGCCAC CTCTTGTGTC CCACCACACA
  CTAACTGTAT AAGTCATGTC ACCAACTTTA GCTCTGGGTC TTTTCCTTGT CTCCCCAACC
  Y
  CCAACCTCCT GATCTCTTAG TCTTCAAGGC TTCTGGTTCA CCTTCCCGTT TGCTCCAGTC
  TCCCCCATGT TTATTCCTCC TAAAGGTCTC TGAAGATCCC AGCAGGGCTG TATTCCGTCG
  TTTTCCCACC ACTGTATGTC TCGCCATTAC TATTACTGTT GTTGTTTTAA ACTCCATCTG
  GCAGGCATTC TGTTCCTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322139526	CHEV_7_31910962	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255742760					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30825368 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18836	CpG island 18836	518 bp distal
Cpgi18837	CpG island 18837	251 bp proximal
Rr645025	regulatory region 645025	within coordinates
Rr645026	regulatory region 645026	891 bp proximal
Scn1b	sodium channel, voltage-gated, type I, beta	Intron
Tssr71935	transcription start site region 71935	773 bp downstream
Tssr71936	transcription start site region 71936	816 bp downstream
Tssr71937	transcription start site region 71937	978 bp downstream
Tssr71938	transcription start site region 71938	1007 bp downstream
Tssr71939	transcription start site region 71939	1050 bp downstream
Tssr71940	transcription start site region 71940	1221 bp downstream