rs255767099 SNP Detail

Summary

• ID
  rs255767099
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101899527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCGGAGG AAGTGGGGGG
  GTGGGGGCCG GGCCGGCAGG GCCGGGGCGG GGCGCGGGGG CGGGCCGGCC GGGGCGGGGC
  GGACTAGGAA GTCGGAGGCC TCCCCCACCC TCCAGCCTCG GGTTTTCTGC AAGCTTTGCC
  CTCCGCACAG TCCCGCACAC CCTGCTTCTC TCCACTCTTC GCCCCGTGAG CCCTGAGACC
  Y
  CTTGAGTCTG GCCTCTCAAG GTCAGGTCTC CCCGCTTTCA CTTGGCATCT CCCCCCCACC
  CCCCAGCAGG GGCCCTAAGC TAGGCGCTGG GCATTTGTTC TCTTCCTAGT ATCTCACTCC
  CCGCCCCGCA GCCTCCGCGG GAAGGCTGAG AAATGCCTTC CGCTCAGCCC GGGAATCTAG
  AGGTAGCCGC GGCTGGCTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322353657	CHEV_7_109398834	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255767099					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101899527 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	within coordinates
Rhog	ras homolog family member G	202 bp upstream
Rr652562	regulatory region 652562	243 bp distal
Rr652563	regulatory region 652563	within coordinates
Rr652564	regulatory region 652564	601 bp proximal
Tssr2354	transcription start site region 2354	44 bp downstream
Tssr68328	transcription start site region 68328	627 bp downstream
Tssr68329	transcription start site region 68329	606 bp downstream
Tssr68330	transcription start site region 68330	65 bp downstream
Tssr73939	transcription start site region 73939	946 bp upstream
Tssr73940	transcription start site region 73940	899 bp upstream
Tssr73941	transcription start site region 73941	846 bp upstream
Tssr73942	transcription start site region 73942	761 bp upstream
Tssr73943	transcription start site region 73943	234 bp upstream
Tssr73944	transcription start site region 73944	197 bp upstream
Tssr73945	transcription start site region 73945	182 bp upstream
Tssr73946	transcription start site region 73946	3 bp downstream
Tssr73947	transcription start site region 73947	146 bp downstream
Tssr73948	transcription start site region 73948	171 bp downstream
Tssr73949	transcription start site region 73949	207 bp downstream
Tssr73950	transcription start site region 73950	256 bp downstream