rs255772057 SNP Detail

Summary

• ID
  rs255772057
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45355940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGCCCCTA ACCCTATCCT
  TCTGTATACT TTTGCCTTTT CCCCCTCTCC GGGTCCCCGT CTCCCTGACC CTCTATTGCT
  GGGGCCTTGT TCTCTTTTCT CTCTGGGTCT CCCCAAGCCC CGTCTTTATC CCTCTCTTCT
  TTTTCTGGGT TCTCTCCCTG CCTGTACCCA CCTCCCTGGG TCTTTGCCCT ACGGCTCCCG
  W
  CTCCTCACTT CTCTGTATCT CCGCCATATC TCTAACTTGG GGTCCCTCCT GTGTCCCTCC
  ACCCCATCCG GTCTCTCCCT GGCCTACAGG TCTCCTGAAG GAAAAGGAGC GCAAGGCAAC
  TCTGCCCTCA GCCCCCGTCC CGGGACCCGG CCTGGAAACG GCGGGCCCAG CCGATGCCCC
  GAGTGGGGCC GTTAGTGGCG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371182943	MGP_WTSI_7_52961886	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255772057					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371182943	MGP_WTSI_7_52961886	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45355940 () rs orientation: forward

Symbol	Name	Function Class
Car11	carbonic anhydrase 11	1834 bp downstream
Cpgi19081	CpG island 19081	848 bp distal
Cpgi19082	CpG island 19082	within coordinates
Dbp	D site albumin promoter binding protein	within coordinates
Rr400318	regulatory region 400318	1501 bp downstream
Tssr66612	transcription start site region 66612	1224 bp downstream
Tssr66613	transcription start site region 66613	1209 bp downstream
Tssr66614	transcription start site region 66614	1167 bp downstream
Tssr66615	transcription start site region 66615	1124 bp downstream
Tssr66616	transcription start site region 66616	1093 bp downstream
Tssr66617	transcription start site region 66617	1063 bp downstream
Tssr66618	transcription start site region 66618	984 bp downstream
Tssr66619	transcription start site region 66619	296 bp downstream
Tssr66620	transcription start site region 66620	268 bp downstream
Tssr66621	transcription start site region 66621	612 bp upstream
Tssr66622	transcription start site region 66622	1296 bp upstream
Tssr66623	transcription start site region 66623	1383 bp upstream
Tssr66624	transcription start site region 66624	1635 bp upstream
Tssr66625	transcription start site region 66625	1679 bp upstream
Tssr72444	transcription start site region 72444	389 bp downstream