rs255796024 SNP Detail

Summary

• ID
  rs255796024
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:32244511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCATGGACA CTACCCTGCG
  GTGTAAGCTG GAAGTAGCCA AGGATGTGGC CAAGCTGAGA GTTGATGCCC TCACACATGC
  CCACCCTACC TAGATATAAA TTGCCCAGTT CTGTGTGCAT CCAGCAATCT GGTACTGAAG
  CACACTCTAG TAATGAGCCC ACTAGGGTAC TTACTAAAGA AGATAAGTCC TGATCAGGAC
  R
  AACAGTACCT ATGTTAGCAC AGAAGCCCTG GAGAGGCAAG GGAACCTTTC TGCCCTGCCC
  AGTCTCCAGA GGGCAAAGCT GCCCTTCCCT CATCCTCTGC CCCTGAACTT TATTCTTTCT
  GAAGACACTC CACAGTTTTG CCTCCTACAA GACCTACTTC CTTAACTAAG ACATGAGTCC
  CTCTCTGCCC TGGTAGCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382906414	MGP_WTSI_11_32194511	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	G	A	G	G	A	A	A	G	G	A	A	A	A	G	G	A	A	A	A	G	G	G	A	G	G	G	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255796024					SNP	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	G	A	G	G	A	A	A	G	G	A	A	A	A	G	G	A	A	A	A	G	G	G	A	G	G	G	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382906414	MGP_WTSI_11_32194511	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:32244511 () rs orientation: forward

Symbol	Name	Function Class
Gm73808	predicted gene, 73808	within coordinates
Gm74521	predicted gene, 74521	1977 bp downstream
Hba-a2	hemoglobin alpha, adult chain 2	1978 bp upstream
Rr444566	regulatory region 444566	1140 bp distal
Rr444567	regulatory region 444567	685 bp distal
Rr444568	regulatory region 444568	384 bp distal
Rr444569	regulatory region 444569	1488 bp proximal
Tssr100842	transcription start site region 100842	1980 bp upstream