rs255803391 SNP Detail

Summary

• ID
  rs255803391
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:80073370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAACAGAGA TCTGTCTGTC
  TGCCTCCTGA GTGCTGGGAT TACAGATGTG TGCCTTCATG CCTGATGAGG TCCTCTGAAT
  TTACTGATTT TTTTTTAATT CCCCGGTCAG AGAAGCTGCA ATACAAATTC TGGATGTGTC
  TCTCCAGAGT GCAGCTCCCT GGGGAGGTGG ATCCTCTCTA GCTTCTAAAG TTCTTTGGAC
  Y
  TGACTGCTGA GGTACCTGCT AGAGCAGTGA TTCTCAATGA GTGGGTCATA ACACCTTTGG
  CAAACTCCTA TATTCACATG ACTATTCATA ACAGTTGCAA AATTACAGTT GTGAAGTAGC
  AAGAAAATTA TTTTTTAAAG ATTTGTTCAT TTATTTTATG TATATGAGTA CACTGTAGCT
  GTCTTCAGAC ATACCAGATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323761718	CHEV_11_79996046	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255803391					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:80073370 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3379	CpG island 3379	1217 bp proximal
D11Bhm113	DNA segment, Chr 11, Boehm 113	1471 bp distal
Rnf135	ring finger protein 135	1307 bp upstream
Rr386348	regulatory region 386348	725 bp downstream
Rr402781	regulatory region 402781	1171 bp upstream
Rr452449	regulatory region 452449	960 bp distal
Rr452450	regulatory region 452450	817 bp proximal
Rr452451	regulatory region 452451	824 bp proximal
Rr452452	regulatory region 452452	1011 bp proximal
Tssr3599	transcription start site region 3599	1363 bp upstream
Tssr103509	transcription start site region 103509	1317 bp upstream
Tssr103510	transcription start site region 103510	1342 bp upstream