rs255825130 SNP Detail

Summary

• ID
  rs255825130
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23718458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGGCCGAGA TCCTGGAGCT
  GGCGGGCAAC GCGGCCCGCG ACAACAAGAA GACGCGCATC ATCCCGCGCC ACCTGCAGCT
  GGCCATCCGC AACGACGAGG AGCTCAACAA GCTGTTGGGC CGCGTGACCA TCGCGCAGGG
  CGGCGTCCTG CCCAACATCC AGGCCGTGCT GCTGCCCAAG AAGACCGAGA GCCACCATAA
  R
  CCCAAGGGAA AGTAAGCCAG TGAGCTAAGT TTTTTTTTTT TTTTTTTTTT TTTTTTAAAC
  AAAACCCAAA GGCTCTTTTC AGAGCCACCA CTTCTTCATA TAAGAGTCTA GTAACATGGT
  TAATTTAGCT TGTGGAAAAA CCTATATTAA TGTTTCAAGC ACAAAACCAT AATTCTGGTA
  GGCTGAGGTA ATTCTTAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324289723	CHEV_13_23626157	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255825130					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23718458 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5359	CpG island 5359	869 bp proximal
Gm55640	predicted gene, 55640	34 bp upstream
Gm60769	predicted gene, 60769	585 bp upstream
H2ac10	H2A clustered histone 10	within coordinates
H3c8	H3 clustered histone 8	1130 bp upstream
Rr281120	regulatory region 281120	within coordinates
Rr403647	regulatory region 403647	346 bp downstream
Rr403648	regulatory region 403648	848 bp upstream
Tssr4007	transcription start site region 4007	583 bp upstream
Tssr118828	transcription start site region 118828	406 bp downstream
Tssr118829	transcription start site region 118829	1123 bp upstream
Tssr121712	transcription start site region 121712	627 bp upstream
Tssr121713	transcription start site region 121713	877 bp downstream