rs255834667 SNP Detail

Summary

• ID
  rs255834667
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170795679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGATCCA CCCCACTCCA
  CCCCCAACTT CTTGGTATCC CATCTCCTCC CAGGGCCAGC CTTTACTAAC CAGAAATCAC
  TCCCAGATCT ACAGGGTCGC TGAGGCGGGT CTGCTCCATT TGACACCGAT ATTCTCCACT
  GTCATTGACT GTGGCCTTAA ACGTGTAGCT GGCTTGGACC TGGCTCCGGA TGGACCTCCC
  R
  TTGTGGAACC ACTGGGTAGA AGAGTTCCCA GGGTTGTGGG TCCCTTCGCA TGTCAGTGTC
  ACCGTGTCTT CCTTGAGCAC CTGGATCCAC GGGGGCTCGA GTTTGACCAC AGCCTTTGGA
  AGATCTGCTC AATTTTGGAG AGAGCAGGCA GTGTGAGGCA AGGAAGCCCC AAGAACCTCA
  GCAGGCCCCA AGTTTCTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352376872	MGP_WTSI_1_172898241	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255834667					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352376872	MGP_WTSI_1_172898241	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170795679 () rs orientation: forward

Symbol	Name	Function Class
D1Dcr16	DNA Segment, Chr 1, Derry C. Roopenian 16	1753 bp proximal
D1Mit148	DNA segment, Chr 1, Massachusetts Institute of Technology 148	1773 bp proximal
Fcgr2b	Fc receptor, IgG, low affinity IIb	within coordinates
Rr372438	regulatory region 372438	within coordinates
Tssr14957	transcription start site region 14957	1587 bp upstream
Tssr14958	transcription start site region 14958	94 bp downstream