rs255834780 SNP Detail

Summary

• ID
  rs255834780
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69490601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGAACTG ATGTTTGGCC
  ACTGGAGGGC AGAGGTCAAA ATGAAAGCCC CTGCTCAAGG CGTGGTGCAT AACCCAGTAT
  CACCCAAATC CACCCTCCAG TTGTTTCTCA GAGCTCTTCC AAATTCTCAG AAAAAGACAA
  GCACACACAG GGCTCTGTGT ATGATATACA TTTATATATA TAATCGCTCT CAGTTTATTG
  K
  ACTTTACCCT CTTTTTACAG TAGATCTGAC ACAGGCATTA AATAACTGCA GAAGGAGACC
  ACTGGGAAGA TGAAGGGGCA GGAAGACCTG GATACCCAAA GGGAAGAGAC ACAGATCCAG
  CGGGAGGAAA GAGGGAAGGA GCCACTTGAG GGTGGGACGT GGGGGCTGCG GTGAAGAGGA
  GATTGGAAAG GATTAAAGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383787285	MGP_WTSI_11_69413277	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255834780					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383787285	MGP_WTSI_11_69413277	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69490601 () rs orientation: forward

Symbol	Name	Function Class
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide	within coordinates
Gm72066	predicted gene, 72066	within coordinates
Rr386229	regulatory region 386229	within coordinates
Rr450033	regulatory region 450033	36 bp distal
Rr450034	regulatory region 450034	165 bp distal
Rr450035	regulatory region 450035	266 bp proximal
Tssr3544	transcription start site region 3544	920 bp downstream
Tssr102487	transcription start site region 102487	238 bp upstream
Tssr102488	transcription start site region 102488	1388 bp upstream
Tssr102489	transcription start site region 102489	1463 bp upstream
Tssr108712	transcription start site region 108712	232 bp downstream
Tssr108713	transcription start site region 108713	377 bp downstream
Tssr108714	transcription start site region 108714	459 bp downstream
Tssr108715	transcription start site region 108715	472 bp downstream
Tssr108716	transcription start site region 108716	784 bp downstream
Tssr108717	transcription start site region 108717	809 bp downstream
Tssr108718	transcription start site region 108718	868 bp downstream
Tssr108719	transcription start site region 108719	879 bp downstream
Tssr108720	transcription start site region 108720	883 bp downstream
Tssr108721	transcription start site region 108721	897 bp downstream
Tssr108722	transcription start site region 108722	978 bp downstream
Tssr108723	transcription start site region 108723	1006 bp downstream
Tssr108724	transcription start site region 108724	1059 bp downstream
Tssr108725	transcription start site region 108725	1083 bp downstream
Tssr108726	transcription start site region 108726	1178 bp downstream
Tssr108727	transcription start site region 108727	1200 bp downstream
Tssr108728	transcription start site region 108728	1244 bp downstream
Tssr108729	transcription start site region 108729	1331 bp downstream
Tssr108730	transcription start site region 108730	1363 bp downstream
Tssr108731	transcription start site region 108731	1394 bp downstream
Tssr108732	transcription start site region 108732	1455 bp downstream