rs255840267 SNP Detail

Summary

• ID
  rs255840267
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156040247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCATTCTTG GCTTTAAGTG
  CTGAGGCATC TAGCTAGACA GTCCGTGTCG TGTCCCCCCC CCCCCCCCCC GCCCCCCCAA
  GGGTTTCTCT GTGTAGCCCT GGCTGTCCTG GAACTCACTC TGTAGACCAG GCTGACTTGG
  AACTCAGAAA TCCGCCTGCC TCTGCCTCCC AAGTGCTGGG ATTAAAGGCA TGCGCCACCA
  Y
  GCCAGGCTGT CTCTTTCTCT CTTTCTTTTT TCTTTTTCTT TCTCCCTCTT TGTTTGTTTT
  TCTTTGTAGC TTTTCTGCCA TCAAGATAGT TTCAGTCTTA AGTTCCCTTC CCTCTTTGGA
  ACCTCATTCC CTAATGTGCT CTCCCGGGCT CTTGGGCCTT CCTTCCTGTG TTGAGTGCAT
  AGCTGCAAAA CACTTCGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356231106	MGP_WTSI_2_156024063	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	C	C	C	T	T	C	C	T	T	C	C	C	C	C	C	C	C	T	T	C	C	C	T	C	C	C	C	T	T	C	T	T	C	T	T	T	C	T	T	C	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255840267					SNP	T	T	C	C	C	T	T	C	C	T	T	C	C	C	C	C	C	C	C	T	T	C	C	C	T	C	C	C	C	T	T	C	T	T	C	T	T	T	C	T	T	C	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356231106	MGP_WTSI_2_156024063	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156040247 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12545	CpG island 12545	1030 bp distal
Gm75148	predicted gene, 75148	1610 bp upstream
Phf20	PHD finger protein 20	within coordinates
Rr374122	regulatory region 374122	982 bp upstream
Rr397432	regulatory region 397432	1568 bp downstream
Rr568209	regulatory region 568209	1675 bp distal
Rr568210	regulatory region 568210	1134 bp distal
Rr568211	regulatory region 568211	780 bp proximal
Rr568212	regulatory region 568212	1595 bp proximal
Tssr21145	transcription start site region 21145	1552 bp downstream
Tssr27045	transcription start site region 27045	1766 bp upstream