rs255855525 SNP Detail

Summary

• ID
  rs255855525
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106936287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTAATCCC AGGTGTGGGG
  ATGTGGGGCT GCTTTGAGCT GTCTAAAGCA GCTGACTATG ATTTGCCTCA TGCCCTAGCA
  GAAGTGGTTT TTGTCAGCTG TAGATAGTTT CTGTGACATT TGGAATTCTG GGAACTTCTC
  AGAGGGTATA TATAAATGCT AGAGCCCCGT CTTCAGGGAG GTTGGAGGCA AATTGTTAGT
  W
  GTCTGACCAT ACACTGCACC AAAACCTCCA AAATTGTGAG CTAAAACTCC TTCCATATTT
  ACCTCATTTT TCGTAGCAAT GACAGTTTAA CATCATCTCT AAATACTGTA TATCTTTTAA
  ATAGCCAAAT CCACTTTCAA AAGGCCTACA TCAATTCTGT TTATTTATTT TGATACACGT
  TCTCACTGTG TAGCTCTGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375926455	MGP_WTSI_8_108733555	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255855525					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375926455	MGP_WTSI_8_108733555	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106936287 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20969	CpG island 20969	651 bp proximal
Prmt7	protein arginine N-methyltransferase 7	1399 bp upstream
Rr669119	regulatory region 669119	792 bp distal
Rr669120	regulatory region 669120	1108 bp proximal
Rr669121	regulatory region 669121	1268 bp proximal
Rr669122	regulatory region 669122	1379 bp proximal
Slc7a6os	solute carrier family 7, member 6 opposite strand	within coordinates
Tssr79236	transcription start site region 79236	489 bp upstream
Tssr79237	transcription start site region 79237	1305 bp upstream
Tssr79238	transcription start site region 79238	1338 bp upstream
Tssr79239	transcription start site region 79239	1361 bp upstream
Tssr82760	transcription start site region 82760	1269 bp downstream