rs255855624 SNP Detail

Summary

• ID
  rs255855624
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46385777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCGG CCGGGAAAGC TTCGAACACC
  G
  GGGACGAAGT AATTTGCAGA AGGGG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325822480	CHEV_19_46471828	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255855624					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46385777 () rs orientation: forward

Symbol	Name	Function Class
Actr1a	ARP1 actin-related protein 1A, centractin alpha	1597 bp upstream
Cpgi11001	CpG island 11001	1436 bp distal
Cpgi11002	CpG island 11002	within coordinates
Gm59146	predicted gene, 59146	1181 bp downstream
Rr405999	regulatory region 405999	1998 bp downstream
Rr406000	regulatory region 406000	1354 bp downstream
Rr406001	regulatory region 406001	411 bp downstream
Rr548728	regulatory region 548728	1611 bp distal
Rr548729	regulatory region 548729	1101 bp distal
Rr548730	regulatory region 548730	302 bp distal
Rr548731	regulatory region 548731	576 bp distal
Rr548732	regulatory region 548732	468 bp distal
Rr548733	regulatory region 548733	223 bp proximal
Rr548734	regulatory region 548734	265 bp proximal
Sufu	SUFU negative regulator of hedgehog signaling	within coordinates
Tssr156751	transcription start site region 156751	1973 bp downstream
Tssr156752	transcription start site region 156752	1945 bp downstream
Tssr156753	transcription start site region 156753	339 bp downstream
Tssr156754	transcription start site region 156754	305 bp downstream
Tssr159650	transcription start site region 159650	1582 bp upstream