rs255863750 SNP Detail

Summary

• ID
  rs255863750
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135982435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCTCCAGGG CTCTCCTTAA CCCTGGTTGC
  AGACCCTTCG AGACCATCAT CTTGCTCACC ATCTTTGCCA ACTGTGTGGC CCTGGCAGTG
  TACCTGCCCA TGCCAGAGGA TGACAACAAC ACTCTGAACC TCGGCCTGGT AAGCAAGCCT
  Y
  CCCACCCTTC CTCTCAAGCT CTGCAGCTCC AGCCTGGGAG TCACTTGGTT TCTGTGGGAG
  ATGCTGCTAC CGTGGCTCCC TCACAGCGTA GACTGGCGTC CTCACTGCTG AGCTACTGAG
  TGGCCCCGAA GCTTCCCAGA CTAAACGTGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319994519	CHEV_1_137951274	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255863750					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135982435 () rs orientation: forward

Symbol	Name	Function Class
Cacna1s	calcium channel, voltage-dependent, L type, alpha 1S subunit	within coordinates
Tssr9037	transcription start site region 9037	1936 bp downstream
Tssr9038	transcription start site region 9038	1901 bp downstream
Tssr9039	transcription start site region 9039	1871 bp downstream
Tssr9040	transcription start site region 9040	1739 bp downstream