rs255880874 SNP Detail

Summary

• ID
  rs255880874
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:73104263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGGCGCCC CCCAGGCCTC
  GCTGCACTCT CAGCTGGGCA CCTACAACCC CGACTTCAGC TCGCTCACGC ACTCGGCCTT
  CAGCTCCACC GGCCTCGGCT CGTCGGCCGC CGCCGCTTCG CACCTGCTCT CCACCAGCCA
  GCACCTGCTG GCCCAGGACG GCTTCAAGCC GGTGCTGCCC TCTTACTCGG ACTCCAGCGC
  M
  GCGGTGGCCG CGGCGGCCGC CAGCGCTATG ATTTCGGGCG CAGCGGCGGC CGCCGCCGGG
  GGCAGCTCGG CGCGCTCCGC CCGTCGCTAC TCGGGCCGCG CCACCTGCGA CTGCCCCAAC
  TGCCAGGAGG CCGAGCGGCT GGGTCCGGCC GGGGCGAGCC TACGCCGCAA GGGGCTGCAC
  AGCTGTCACA TCCCGGGCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354455954	MGP_WTSI_2_73111976	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255880874					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354455954	MGP_WTSI_2_73111976	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73104263 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11767	CpG island 11767			1768 bp distal
Cpgi11768	CpG island 11768			within coordinates
Rr406574	regulatory region 406574			1675 bp proximal
Rr559118	regulatory region 559118			1984 bp distal
Rr559119	regulatory region 559119			161 bp proximal
Rr559120	regulatory region 559120			626 bp proximal
Sp9	trans-acting transcription factor 9			Coding-Synonymous
				Intron
				Noncoding-Transcript-Variant
Tssr18369	transcription start site region 18369			1980 bp downstream
Tssr18370	transcription start site region 18370			1960 bp downstream
Tssr18371	transcription start site region 18371			347 bp upstream
Tssr18372	transcription start site region 18372			794 bp upstream
Tssr18373	transcription start site region 18373			812 bp upstream
Tssr18374	transcription start site region 18374			880 bp upstream