rs255887674 SNP Detail

Summary

• ID
  rs255887674
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:117113509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGATACAGG CTCATCTGTC
  TCAGAGTTAG TGTGAATGAA GGAACTTAAG AAAGATCAGG ACAGGCACAG CTCACTAGTC
  GCTCCTGAAT GCCTCGTGAC ACTGGGAACA TCCTCTCAAG GGTTAAACAG ACTGACACAT
  GAGCTGAGAA TTTATTTTTT AAGCAAGATG AAAGGGGCAG CTCTAAGAAA GACAGGTCAC
  R
  GGTTCCCTGA TAAGTTTCTG AGTTCAGACA ATCTCAGTTC TCATCCACTG AGACTCCTGT
  GCCCTCAGAA ACCTTCCCGG CCCACCACAG AGGCTGTTCT AACTGGGTGC TGGGACTGCA
  CAAAGCCCTG CAGCTCACAC GACTGCTGTT TCCCAAGATC AACTGGTCTC CTATAAGCAG
  TTCTTGTATT TTTATTCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381913463	MGP_WTSI_10_116714660	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	A	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	A	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255887674					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	A	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381913463	MGP_WTSI_10_116714660	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117113509 () rs orientation: forward

Symbol	Name	Function Class
Gm67237	predicted gene, 67237	within coordinates
Lyz2	lysozyme 2	mRNA-UTR
Rr439488	regulatory region 439488	1706 bp distal
Tssr95904	transcription start site region 95904	264 bp downstream
Tssr95905	transcription start site region 95905	196 bp downstream
Tssr95906	transcription start site region 95906	142 bp downstream
Tssr95907	transcription start site region 95907	109 bp downstream
Tssr95908	transcription start site region 95908	36 bp upstream
Tssr95909	transcription start site region 95909	112 bp upstream
Tssr95910	transcription start site region 95910	247 bp upstream
Tssr95911	transcription start site region 95911	377 bp upstream
Tssr95912	transcription start site region 95912	472 bp upstream
Tssr95913	transcription start site region 95913	532 bp upstream
Tssr99410	transcription start site region 99410	152 bp upstream
Tssr99411	transcription start site region 99411	74 bp upstream
Tssr99412	transcription start site region 99412	within coordinates
Tssr99413	transcription start site region 99413	60 bp downstream
Tssr99414	transcription start site region 99414	149 bp downstream
Tssr99415	transcription start site region 99415	232 bp downstream
Tssr99416	transcription start site region 99416	282 bp downstream
Tssr99417	transcription start site region 99417	394 bp downstream
Tssr99418	transcription start site region 99418	408 bp downstream
Tssr99419	transcription start site region 99419	423 bp downstream
Tssr99420	transcription start site region 99420	495 bp downstream
Tssr99421	transcription start site region 99421	569 bp downstream
Tssr99422	transcription start site region 99422	1301 bp downstream