rs255891020 SNP Detail

Summary

• ID
  rs255891020
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148989158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGAGCGA GAGGAGAGAG
  GGGGGGAAAA AAAAAAGTTG CCTCAGAACT GCTGCGCCCA GCTTCCCCCG CCCGCCCGCC
  CGCCTTGTTT TCTCTCCAGC CAGCAGCGCC CGGCCGAGTC AGCCATGTTC CAGCGAGCGC
  AGCGGCGCCG CTCCCCCCCA CACGGCCGCC CCGCTCGCCC GCCGCCTCAC CCGGCCCGAG
  Y
  CGCCCCGCAC GGCCGCCCCC GGCCCACCCG CGGCCGCCCT CGCCCGCAGC GGCGCCCCGC
  CCGCCGCCCC GCGCTCCCCG CCGCGGCCGC CCATACAGCG GGGAAGCGCC GCTGCCCGCC
  GGCTCGCTCG CTCCGCGCAC GCCGCCTGCC CGAAACGCTC GGCCCTGGGG GCCACAAACA
  CGTTTTGGGG AAAAAAAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss367145520	MGP_WTSI_5_149863924	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs255891020					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367145520	MGP_WTSI_5_149863924	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148989158 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17090	CpG island 17090	within coordinates
D5Mit287	DNA segment, Chr 5, Massachusetts Institute of Technology 287	1511 bp proximal
Hmgb1	high mobility group box 1	within coordinates
Rr124812	regulatory region 124812	within coordinates
Rr378801	regulatory region 378801	332 bp downstream
Rr399531	regulatory region 399531	662 bp upstream
Tssr1757	transcription start site region 1757	866 bp upstream
Tssr49872	transcription start site region 49872	847 bp upstream
Tssr54613	transcription start site region 54613	1743 bp upstream
Tssr54614	transcription start site region 54614	1035 bp upstream
Tssr54615	transcription start site region 54615	958 bp upstream
Tssr54616	transcription start site region 54616	893 bp upstream
Tssr54617	transcription start site region 54617	724 bp upstream
Tssr54618	transcription start site region 54618	640 bp upstream
Tssr54619	transcription start site region 54619	369 bp upstream
Tssr54620	transcription start site region 54620	690 bp downstream
Tssr54621	transcription start site region 54621	712 bp downstream