rs255902109 SNP Detail

Summary

• ID
  rs255902109
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:165435481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTAATAA TACAATAATA
  CAAGAGTCTC GCCGCTGAGC TCTGGATGAG AAAATCAAGT CCAAGAGCCG ATGCTCACTC
  TGCTTCTAAA AGGCGAAAGA GTTATTGTGG TGTGGGGACA TACCCAGATC CTCCTCACTG
  GGTGGGGACA GCCATGACAA CGGTAGGTAC TTGCTCTGGT ATGGTGTCTG TGGTGGGAAG
  R
  AAACAGATAA GACGGGAGAC AGAGCCAGCA ATGCCAGAGC CTGACCCATC TACACTTGGG
  GACCCCTTTT AAAGAATTAC ACATACAGGT GATTATCTCT CTAAATCAAG GAAAGGGTTC
  ACAACTGGTT CCGACTTGAT TTGATTTTTT GTGTATGAGC ATCCTGCTTG TACGTATGTC
  TGTGTACCAT GTGCAGGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320608369	CHEV_2_165419061	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255902109					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165435481 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12713	CpG island 12713	1043 bp proximal
Eya2	EYA transcriptional coactivator and phosphatase 2	1471 bp upstream
Rr569954	regulatory region 569954	372 bp proximal
Rr569955	regulatory region 569955	981 bp proximal
Rr569956	regulatory region 569956	1482 bp proximal
Rr569957	regulatory region 569957	1653 bp proximal
Rr569958	regulatory region 569958	1830 bp proximal
Tssr21727	transcription start site region 21727	1448 bp upstream