rs255903652 SNP Detail

Summary

• ID
  rs255903652
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:104178968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTACAGAC CCAGACTCAT
  GAGTCCAGGG ATGGCACCAT GCACAATTGG CTGAGCACAC TCCATCAATC AGTATGAAAA
  TGCTCTGCAA ACTGAGACAC AGGTTCAAAT GACAACTGAG ATTCCTTCCT GTCAGATGAC
  CACACTTTGT TTCAAGTTGA CATGAATCTA GCCTGCACAG TGGAAAGGAA AGAGCTGGAA
  Y
  GACCAACTCT AAAATTTGAT GTTGAATGTG GTGGATAACT GGAGCCAGCA GAATTCAGCA
  GAAACACCCA GGAGTCTCAA AAGTGACACT TAAGTTAGGG TGGATAGGAC CGTGTGAAAA
  GTGCCCAGTG TTCTTTCCCT GGTTTCACAA CCAAATGTAA GCAAAGAGGC AGTGAAGACA
  TTAAACTAAA GTCTGTAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ
ss387178395	MGP_WTSI_12_105450919	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ
rs255903652					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387178395	MGP_WTSI_12_105450919	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:104178968 () rs orientation: forward

Symbol	Name	Function Class
Rr471886	regulatory region 471886	1312 bp proximal
Serpina3f	serine (or cysteine) peptidase inhibitor, clade A, member 3F	1835 bp upstream
Tssr114833	transcription start site region 114833	1803 bp upstream
Tssr114834	transcription start site region 114834	1829 bp upstream