rs255920283 SNP Detail

Summary

• ID
  rs255920283
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:89283246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGTGTTTA ACTAGCAGGC
  TCAACGTTTT TCAGCCTAAT AGTATGACCT CATTTGATTA TTGTAAAAAG TTTCAAAACC
  ACTGGATTTG AATTAATATT TAAGCTCTCA TAAATGCTTG CTAAGCTATT ACTGCAAATA
  AAATGTGAGA ATAGTCCTCA TGCAGGAAGT TCTCAAAAAA TGTTAGTAGT TTCTCTGATT
  Y
  AGGATGGTGA AATTCCAATG ACACAACTTC TATGGAAAAT GCTATGTTAA AGGGTGAGGC
  CAACTGTGCA GTGCTGTTTC CTACAGCATC AACTGAAACT AAGGAAAATG TCTGTGTGCT
  CAGATTCACT TGTCACACTG ACCCCCTACT CTCCAAAGAG ACCTTGAGTT CCCGGTACTC
  TGCTCCGGTA CAAAGCATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372259769	MGP_WTSI_7_96782548	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255920283					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372259769	MGP_WTSI_7_96782548	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89283246 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A230065N10Rik	RIKEN cDNA A230065N10 gene			914 bp upstream
Cpgi19393	CpG island 19393			751 bp distal
Me3	malic enzyme 3, NADP(+)-dependent, mitochondrial			Intron
				Noncoding-Transcript-Variant
Rr650822	regulatory region 650822			1325 bp distal
Rr650823	regulatory region 650823			630 bp distal
Tssr67672	transcription start site region 67672			1624 bp downstream
Tssr67673	transcription start site region 67673			1588 bp downstream
Tssr67674	transcription start site region 67674			1546 bp downstream
Tssr67675	transcription start site region 67675			1496 bp downstream
Tssr67676	transcription start site region 67676			1471 bp downstream
Tssr67677	transcription start site region 67677			1307 bp downstream
Tssr67678	transcription start site region 67678			1126 bp downstream
Tssr67679	transcription start site region 67679			1045 bp downstream
Tssr67680	transcription start site region 67680			1016 bp downstream