rs255931960 SNP Detail

Summary

• ID
  rs255931960
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142131417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACTCCTA TCACCTCCCT
  GGAGGCAGCG GCCTCAGTCT TTACTGGCAA CCCTGCACCT CTTCTTTCTT CTCTCTAAGA
  GCTCTTTCCA CCTGGGGTCG CCAATGGTCC CCCAGCCTCC TTCTGTCTCG GCTCCCCCCG
  AGACGATGTC TCCTTTGCTA ACTATCCTGC CTTTCTATGT GCCATTCTGC TGCGAGGCCA
  R
  CCGCTTCTTC TCACCAGGCC CCCTCTCTAA ACCTTCGTTT AGAAGGTCAG TGGAGCGAGG
  CCAAGAGAGA AGAAGGAGAC TCACCTGCCC AGCAGACGGC GGTCCTCACC TGCCCACTGC
  TGCCAGCTAT ACCTTCACTG CCCAGGTCTG GGGTCGAACC CTTCCCAGCA GCTCCCCTTT
  ATCCGACCAG CCGCCACGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373453174	MGP_WTSI_7_149763585	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255931960					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373453174	MGP_WTSI_7_149763585	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142131417 () rs orientation: forward

Symbol	Name	Function Class
Gm56420	predicted gene, 56420	757 bp downstream
Gm56421	predicted gene, 56421	169 bp upstream
H19	H19, imprinted maternally expressed transcript	within coordinates
Mir675	microRNA 675	533 bp upstream
Rr658231	regulatory region 658231	455 bp proximal
Rr658232	regulatory region 658232	1579 bp proximal
Tssr2460	transcription start site region 2460	420 bp downstream
Tssr2461	transcription start site region 2461	231 bp upstream
Tssr70213	transcription start site region 70213	1609 bp downstream
Tssr70214	transcription start site region 70214	1027 bp downstream
Tssr70215	transcription start site region 70215	704 bp downstream
Tssr70216	transcription start site region 70216	640 bp downstream
Tssr70217	transcription start site region 70217	623 bp downstream
Tssr70218	transcription start site region 70218	273 bp downstream
Tssr70219	transcription start site region 70219	235 bp downstream
Tssr70220	transcription start site region 70220	123 bp downstream
Tssr70221	transcription start site region 70221	84 bp downstream
Tssr70222	transcription start site region 70222	26 bp downstream
Tssr70223	transcription start site region 70223	93 bp upstream
Tssr70224	transcription start site region 70224	150 bp upstream
Tssr70225	transcription start site region 70225	188 bp upstream
Tssr70226	transcription start site region 70226	285 bp upstream
Tssr70227	transcription start site region 70227	357 bp upstream
Tssr70228	transcription start site region 70228	380 bp upstream
Tssr75815	transcription start site region 75815	1887 bp upstream
Tssr75816	transcription start site region 75816	1826 bp upstream
Tssr75817	transcription start site region 75817	1663 bp upstream
Tssr75818	transcription start site region 75818	1587 bp upstream
Tssr75819	transcription start site region 75819	1417 bp upstream
Tssr75820	transcription start site region 75820	1366 bp upstream
Tssr75821	transcription start site region 75821	1353 bp upstream
Tssr75822	transcription start site region 75822	1192 bp upstream
Tssr75823	transcription start site region 75823	1149 bp upstream
Tssr75824	transcription start site region 75824	1116 bp upstream
Tssr75825	transcription start site region 75825	992 bp upstream
Tssr75826	transcription start site region 75826	944 bp upstream
Tssr75827	transcription start site region 75827	924 bp upstream
Tssr75828	transcription start site region 75828	792 bp upstream
Tssr75829	transcription start site region 75829	302 bp upstream
Tssr75830	transcription start site region 75830	275 bp upstream
Tssr75831	transcription start site region 75831	254 bp upstream
Tssr75832	transcription start site region 75832	188 bp upstream
Tssr75833	transcription start site region 75833	111 bp upstream
Tssr75834	transcription start site region 75834	150 bp downstream
Tssr75835	transcription start site region 75835	186 bp downstream
Tssr75836	transcription start site region 75836	208 bp downstream
Tssr75837	transcription start site region 75837	228 bp downstream
Tssr75838	transcription start site region 75838	305 bp downstream
Tssr75839	transcription start site region 75839	318 bp downstream
Tssr75840	transcription start site region 75840	360 bp downstream
Tssr75841	transcription start site region 75841	362 bp downstream
Tssr75842	transcription start site region 75842	399 bp downstream
Tssr75843	transcription start site region 75843	406 bp downstream
Tssr75844	transcription start site region 75844	413 bp downstream
Tssr75845	transcription start site region 75845	459 bp downstream