rs255932164 SNP Detail

Summary

• ID
  rs255932164
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13839648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTTAGCC TTTTAAAATG
  TGGTTAAGTT TTCAACTAAT ATTCACTTCA CCAAAGCAAA GCTGCCTGCT ACTCTCTCTG
  TTTGCTCAAT TTCTGAGTGC TTGGGCAGCT GCTCTGTTGT GTTTGCTGAA AAGAAATTGG
  ATTCTTAAAG AAACGGAGTA ATCTTCTCTA TTAAGCAATT AAATAAAACG GACTTTTAGC
  R
  TGTGGACATG AAAGTGGGAG AAAGAGGGAG AGTGTGGGGG TGGAACTTTT TAAAAATCAC
  ATTTGGATTT TAAAAGATGT AACTTAAAAT GATGCTTGGT AGATTTTTTT TTTCTATTAA
  GGCTTTCTAG TTTAAGGCAA CGGGCAGCTG AATATCAAGG AACTTACACA ATGAAAGGAG
  AGGTTGCTTA AATGGAAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379498341	MGP_WTSI_10_13683710	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255932164					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379498341	MGP_WTSI_10_13683710	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13839648 () rs orientation: forward

Symbol	Name	Function Class
2900084C01Rik	RIKEN cDNA 2900084C01 gene	1870 bp upstream
Cpgi1318	CpG island 1318	639 bp proximal
Gm56954	predicted gene, 56954	164 bp downstream
Gm66890	predicted gene, 66890	716 bp upstream
Rr384171	regulatory region 384171	160 bp upstream
Rr427854	regulatory region 427854	226 bp proximal
Rr427855	regulatory region 427855	727 bp proximal
Rr427856	regulatory region 427856	1828 bp proximal
Tssr92402	transcription start site region 92402	722 bp upstream
Tssr92403	transcription start site region 92403	892 bp upstream
Tssr92404	transcription start site region 92404	923 bp upstream
Tssr92405	transcription start site region 92405	945 bp upstream
Tssr92406	transcription start site region 92406	1110 bp upstream
Tssr92407	transcription start site region 92407	1335 bp upstream
Tssr92408	transcription start site region 92408	1354 bp upstream
Tssr92409	transcription start site region 92409	1386 bp upstream
Tssr92410	transcription start site region 92410	1424 bp upstream
Tssr92411	transcription start site region 92411	1875 bp upstream
Tssr92412	transcription start site region 92412	1947 bp upstream
Tssr92413	transcription start site region 92413	1979 bp upstream
Tssr96784	transcription start site region 96784	1740 bp downstream
Tssr96785	transcription start site region 96785	1758 bp downstream