rs255934351 SNP Detail

Summary

• ID
  rs255934351
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96182539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATATTTA TTCGTTTACA
  AACCCTCAGT TGTCTAAAGA AGGTTATCTT AAACTAAAAG GGCTTGAAAA AGGTGATTGG
  TTTCCGGAAA AAATCTGCTT AATTTGAATT TCTAAGAGAC AGCCCTTAAA ACCCGCAGCT
  TCAATTTGTA AGAAAAAGCC CTTAAAACCT GCGGCTTCCC CAGAACTGAC CGCTGCAACC
  S
  CTGGCGAGCA CAGGGGAACC TGGTCCCGAA AGCAGGCGTT GGGGCGGGAG TGATCTGTCT
  TCTCCCTCCC CCCCACCCCA GTTTCTGAGG TGCTGAGGTG GAGAATCTGC TTGTTAGAGT
  ATCGAGCTTG GCCCCTATCC AGGACACCTT CCCTCCCGAG GCAAAAACTA GACCCTGTGG
  ACTGACGCCC ACCACCCCCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323820392	CHEV_11_96153027	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255934351					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96182539 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3639	CpG island 3639	1589 bp proximal
Hoxb5os	homeobox B5 and homeobox B6, opposite strand	within coordinates
Hoxb6	homeobox B6	1108 bp upstream
Hoxb7	homeobox B7	1551 bp downstream
Rr386515	regulatory region 386515	within coordinates
Rr455356	regulatory region 455356	273 bp proximal
Rr455357	regulatory region 455357	774 bp proximal
Rr455358	regulatory region 455358	1694 bp proximal
Rr455359	regulatory region 455359	1921 bp proximal
Tssr104478	transcription start site region 104478	440 bp upstream
Tssr104479	transcription start site region 104479	740 bp upstream