rs255954355 SNP Detail

Summary

• ID
  rs255954355
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173917772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTATTATT TTTTTCTTTT
  TTCCCTGGCC TGGTTGTTTT TCGGATACTT TTTTTTTTCT CACAGTTTAA AGAAAAAAAA
  TAAAAAAATA AAAAGGTAAG GCCATCTCAG CAGCGCCAGG CGCCTGCAGT GGAGCGTGCC
  TGGCCTGCAG AGGCAGACTT CTTCCACTTT TCCTCCGCCC CCGCGCAGGA CTAGGCTCTG
  Y
  AAGAGCCACG TTTCCACATT TCTGCCTGCC TGACAATCCT ACTAGAAGTT TACAATTGCC
  TGGACCCCAG TGGTGGTCTT CGGCTCCAGG GCCAAGGTTT TGAAGCCGTT TTTTGGGGCC
  AGGACGCCTG CCCCAGAGTC TGTACACTCT TAGGAAAAGG GGAAGAAGGC GCCCCGGGAA
  CTGTCCCAGA GAGGGCGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356682624	MGP_WTSI_2_173901480	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255954355					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356682624	MGP_WTSI_2_173901480	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173917772 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12851	CpG island 12851	675 bp distal
Cpgi12852	CpG island 12852	168 bp proximal
D130084N16Rik	RIKEN cDNA D130084N16 gene	1494 bp upstream
Gm75644	predicted gene, 75644	1025 bp upstream
Rr397552	regulatory region 397552	1398 bp upstream
Rr572061	regulatory region 572061	1036 bp distal
Rr572062	regulatory region 572062	535 bp distal
Rr572063	regulatory region 572063	267 bp proximal
Rr572064	regulatory region 572064	453 bp proximal
Rr572065	regulatory region 572065	954 bp proximal
Stx16	syntaxin 16	329 bp upstream
Tssr22077	transcription start site region 22077	317 bp upstream
Tssr22078	transcription start site region 22078	1066 bp upstream