rs255964713 SNP Detail

Summary

• ID
  rs255964713
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132356352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAGCAGTC TCTGACTCTA
  CAGTCACTGG TCACTCAGGC TGGGTCATGG CCGGCTACCT ACCTGTAAAC CAGCCAGGGG
  CTCCTGAGGC CACCTCCTCC ACTCGGCCTG CATATATTTG TGGGCAGCAA TGTCACTGGG
  ACACAGCCCA GAACGGGGTG GGGGGTGGGG TCAGTCAGGG CACCCTTCAC ACGGTGGCTT
  Y
  TATCTGAAAT TATTTGGCTG TTCAACCCAT GCAGATCTGC ATGTGTGACA AGAAATAAAA
  ATACCCAATA GCCGGAGCTG CTTCCCTGGT CTCCTTCTGC AGGAAGCATG AGTTTTTGTG
  TGCTGTGGGG CTCTGTGCCA GCACAGCCTC ACAGCACATG GGGCCCGAGT ACAGCTGGTC
  TTGGAGCTCG GCGACTTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355708503	MGP_WTSI_2_132340168	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	T	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255964713					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	T	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355708503	MGP_WTSI_2_132340168	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132356352 () rs orientation: forward

Symbol	Name	Function Class
1700026D11Rik	RIKEN cDNA 1700026D11 gene	within coordinates
Gm74612	predicted gene, 74612	1928 bp upstream
Rr367319	regulatory region 367319	1547 bp downstream
Rr367320	regulatory region 367320	241 bp downstream
Rr397333	regulatory region 397333	1989 bp upstream
Rr565480	regulatory region 565480	1939 bp distal
Rr565481	regulatory region 565481	1441 bp distal
Rr565482	regulatory region 565482	within coordinates
Rr565483	regulatory region 565483	1863 bp proximal
Tssr26474	transcription start site region 26474	1923 bp upstream
Tssr26475	transcription start site region 26475	513 bp upstream