rs255965484 SNP Detail

Summary

• ID
  rs255965484
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:126912735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCAGCTC CAGAACACAA
  GCCTCTGACA GGAAATATAC TTGCATCTTC CCGGATAGCC ACAGTGATGA GAAAGGAAGT
  CCTAGGGAGG CTAGTCCACA GGACTGCCTA GTGGGGGAAA CTCTAGATTT CACCTTTGTC
  TGGAACAGCA TGGGGTTGGG ACCAGGCAAA GGAATTCTCT TAGTCCTGGG GGGGGGGGGG
  S
  GGGGAGCTAG TGTGATGGGG CACCCCAGTG TCCCTAGCAC CATAATCTCA CAACCTTGGT
  TCTAGAGCAG CCTCGATTAC AGAGCAAGTC CTAGACTCAG CTATCCAAAA GAAGAGAAAG
  AAAGGAAGGA AGAAAGAAAG TAGGGTAAGG AGAGAGTGGA GGCTGATAGA CGTTTCTCTG
  TATCTTTGTG TGTGGTGTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SWR/J	WSB/EiJ
ss382177796	MGP_WTSI_10_126513922	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	G	G	C	G	G	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SWR/J	WSB/EiJ
rs255965484					SNP	C	C	C	G	G	C	G	G	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382177796	MGP_WTSI_10_126513922	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:126912735 () rs orientation: forward

Symbol	Name	Function Class
Agap2	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	within coordinates
Rr213500	regulatory region 213500	1535 bp distal
Rr224393	regulatory region 224393	334 bp distal
Rr224394	regulatory region 224394	265 bp proximal
Tssr96119	transcription start site region 96119	1541 bp downstream
Tssr96120	transcription start site region 96120	1468 bp downstream