rs255967079 SNP Detail

Summary

• ID
  rs255967079
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:56298489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTCCTCAT CCCCCACTGG
  AGCTGCCCGC CTTAGATTCT ATCCCAAGAA CCTGGGTACT GGCAGGAAGA GGAGGGGGGA
  GTCATCTCTC CTACTCTCGT GCCCTCAGGG CTAGATCTCC CATGATGCTC AGGTGAGGGG
  TGGAGCCAGT TCTGCACAGC CCTCAGACAT CAATATGCCC TCCAGCAGCA GCGAGGTCCA
  K
  GGATGTCTGC CTGGCCTTTG GTGGTAACAG ACCCAGATGT GGTCCCTGGT GGCAGCACAG
  GCCAGGACCT TACCTTGGTC TCAGTTGTCA TCACTGGCTA TTCACATCAG GCTGCTCCTC
  GCTACCTCTG AGTCTGCAGT TCTGCCTCTC TTCATTGTGC CCACATCCTC CTGTTTCTCT
  TTCTCTCCCA TTTCTCCATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386071310	MGP_WTSI_12_57352691	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	G	T	T	T	G	G	T	G	G	G	T	G	G	T	T	T	G	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255967079					SNP	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	G	T	T	T	G	G	T	G	G	G	T	G	G	T	T	T	G	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386071310	MGP_WTSI_12_57352691	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:56298489 () rs orientation: forward

Symbol	Name	Function Class
Gm19990	predicted gene, 19990	1539 bp upstream
Gm25917	predicted gene, 25917	611 bp downstream
Gm47682	predicted gene, 47682	within coordinates
Rr256861	regulatory region 256861	512 bp proximal
Rr260934	regulatory region 260934	889 bp distal
Rr267727	regulatory region 267727	within coordinates
Tssr113509	transcription start site region 113509	1443 bp upstream
Tssr113510	transcription start site region 113510	1484 bp upstream
Tssr113511	transcription start site region 113511	1524 bp upstream
Tssr113512	transcription start site region 113512	1546 bp upstream