rs255988396 SNP Detail

Summary

• ID
  rs255988396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:53671256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATATGAA TAGGCAAGAG
  GTTGACATCC GATATCTTCA TCTCTGACCT TTGCTCTATT TGTTGATCAG CATCCCTCAC
  TGAAGCTGGA GGTGTCCAAT AGCTAGAGAG ATTGGCTAGA GGCCTCAGGA TCCTCCTGTC
  TCTACCTTCC TGGCTCTGGG ATTGCAGGTG AGCACTTCCA TGCCTGGCTT TCTATGTGTG
  Y
  ATTGACCATT GACTTGGAGT CCTCACACTT ATACAGTAAG CACTGATTAG GTCACCTCCT
  TAATCAAGGC ACTTCCTTTA ATTCTTCATC TTATTAATAT ATTTTACTTC TATTATTTGA
  ATCTGTTTCC CAAGTATGTA TTTATTTAGC TGTTTTTTTT TTTTTAATAT CATTTCCTTT
  CCCAGGAACT TAAGCTCATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320769754	CHEV_3_53567757	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255988396					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53671256 () rs orientation: forward

Symbol	Name	Function Class
C820005J03Rik	RIKEN cDNA C820005J03 gene	within coordinates
Rr374977	regulatory region 374977	46 bp upstream
Rr576748	regulatory region 576748	1726 bp distal