rs255992108 SNP Detail

Summary

• ID
  rs255992108
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:77575290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aaatcacac atacaaaata CACCTAATTA
  tgtgtaccac gtgtgtgtct ggtgcccttg gacttcagaa gggaagttgg gcccccagaa
  ctagagctat ggatgatcat gctgctgctg tgtgagtgct cagcattgaa ctctggtcct
  Y
  tgcaagagca gaaaacgctg cttttaacag ctgacctatt cctccagccT TAAGGGCTTT
  ATCATTGAAA AGGTATGGGG TTTCAAGAGA TATAGGTTCT AGTgcctgca atgacagtat
  ttgtgagggg gactgaaaca atttgaagct                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323755517	CHEV_11_77497966	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255992108					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:77575290 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3317	CpG island 3317	1308 bp proximal
D11Bhm149	DNA segment, Chr 11, Boehm 149	1221 bp distal
D11Bhm150	DNA segment, Chr 11, Boehm 150	902 bp distal
Gm72230	predicted gene, 72230	within coordinates
Nufip2	nuclear FMR1 interacting protein 2	1276 bp upstream
Rr386319	regulatory region 386319	1756 bp upstream
Rr402754	regulatory region 402754	1169 bp upstream
Rr451737	regulatory region 451737	1201 bp proximal
Tssr103164	transcription start site region 103164	1289 bp upstream
Tssr103165	transcription start site region 103165	1668 bp upstream
Tssr103166	transcription start site region 103166	1697 bp upstream
Tssr103167	transcription start site region 103167	1765 bp upstream
Tssr109342	transcription start site region 109342	1514 bp downstream