rs255996122 SNP Detail

Summary

• ID
  rs255996122
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70989438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGATCTTG TGCTCGAAAT
  GAATAGAAAG AGCAAGATAG CATCTTCAAA GCTTTTGGCG TCCTGAGTCC CAGGAGACTT
  GCAGACCAGC ATAGGGGGTT GCTGGCTGCT TACCTGTGAG GAACCGAGAG CCCCCACCGC
  GCGAACTTAC CACCGGTTTC CAGCCAGCTG GACCCAGAGA ATGGGGGAGG CTGCGGGTCT
  Y
  CCGGGCTCCC AGACGCTGCA GCTGCGAGTC CCAGGGCGCA CGCAGGTGTC TGCTAGGGGG
  AAAAAAAAAA CGAGGACACC TCAGTGAAAA TGCGGGCACT GCAGAGCTCA GCCAAGGGCG
  GAATGCACTT GCAGCCATCA GACTCTGCTG GTCCTAGCGC CAGGACTCAC CTGCTCACTG
  ACCTGCGCCA GCAGCAGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324417471	CHEV_13_70980197	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255996122					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70989438 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	within coordinates
Cpgi5821	CpG island 5821	within coordinates
Gm36529	predicted gene, 36529	within coordinates
Tssr123158	transcription start site region 123158	384 bp downstream
Tssr123159	transcription start site region 123159	410 bp downstream
Tssr123160	transcription start site region 123160	443 bp downstream
Tssr123161	transcription start site region 123161	471 bp downstream