rs255996340 SNP Detail

Summary

• ID
  rs255996340
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:79213302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGATAGG GTCTCCCACT
  GAATCTGGAG CTCCCCCACT GGGTTAGCCT AGCTGGCTAT GGAACTCCAG GAGGCTTCTT
  GTTTCCTCTT TCCCAGCTTT GAAGTTTAAA ACATTTACCT TTTTCCGTGG GTGCTGGGTA
  TCGAACTCAG ATCATTGTGA CAACTTCACA AGCACTTTTC CTACTGAGGT ATCTAACCAG
  Y
  CCCCGAACAA GCCTAGTGGC AAGTGATAAA ACTGTATTTG TTGCCTACCA ACTCTACCTC
  AAGATGCCAG GCAATTCTGG GTGTGGTTAT TGCACACGTA CAATCTCAAC ATTTGGATGC
  TGGATCAGGA GTTCAAACCC AGCCACAACT AGTTCAGTTG AATCCCAACC TGGCACTCTG
  TCTCTCAATA AATAAATGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394675177	MGP_WTSI_15_79159532	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	T	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255996340					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	T	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394675177	MGP_WTSI_15_79159532	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:79213302 () rs orientation: forward

Symbol	Name	Function Class
2310026G15Rik	RIKEN cDNA 2310026G15 gene	388 bp downstream
Cpgi7329	CpG island 7329	564 bp distal
Pla2g6	phospholipase A2, group VI	712 bp upstream
Rr404497	regulatory region 404497	580 bp downstream
Rr505593	regulatory region 505593	1149 bp distal
Rr505594	regulatory region 505594	1361 bp distal
Rr505595	regulatory region 505595	359 bp distal
Rr505596	regulatory region 505596	341 bp proximal
Rr505597	regulatory region 505597	482 bp proximal
Rr505598	regulatory region 505598	840 bp proximal
Rr505599	regulatory region 505599	971 bp proximal
Tssr132082	transcription start site region 132082	1508 bp downstream
Tssr135328	transcription start site region 135328	952 bp upstream
Tssr135329	transcription start site region 135329	911 bp upstream
Tssr135330	transcription start site region 135330	841 bp upstream