rs255999298 SNP Detail

Summary

• ID
  rs255999298
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:119231450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCCCCAC CCCTCCCCCG
  TTCATGGCCC CTCCGGACTC GGCCCCTGCG CCCGGGGCCC GGGCCCAGCC CCGTTGCGCC
  ATGCCCGCGT CGGGCGCGCC CTGGCCCGCG CCCCGCCGCC GCCCCCCGGC TCCCGCGTCG
  CCCCATAGCC CGGGCCGCAC TGCGCGCCGC CCGCAGCGGC CCTGAGCCCC TATCTCCGCA
  Y
  ACTGCCTGGG AACCGAAGCG CAGAAGCGCG CGCTCCTGGA AGCGAGACCC AGAGAAGGAG
  CGGGAAGCAG AGCGCAGCCG CCGCCGGGCC CTGCGCGCCC CGGGAGCGCA GCGCGGCCCT
  GCCCGCGGGC TCCGGGTGTC CGCGGGGCGG CGCCGCGGAA CATGACGGCG CCCTGGGCGG
  CCCTCGCCCT TCTCTGGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379136859	MGP_WTSI_9_119311502	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255999298					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379136859	MGP_WTSI_9_119311502	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:119231450 () rs orientation: forward

Symbol	Name	Function Class
Acvr2b	activin receptor IIB	within coordinates
Cpgi22474	CpG island 22474	within coordinates
Gm53515	predicted gene, 53515	486 bp upstream
Gm69683	predicted gene, 69683	916 bp upstream
Rr688480	regulatory region 688480	927 bp distal
Rr688481	regulatory region 688481	within coordinates
Rr688482	regulatory region 688482	400 bp distal
Rr688483	regulatory region 688483	71 bp proximal
Rr688484	regulatory region 688484	136 bp proximal
Rr688485	regulatory region 688485	296 bp proximal
Tssr87682	transcription start site region 87682	231 bp downstream
Tssr87683	transcription start site region 87683	159 bp downstream
Tssr87684	transcription start site region 87684	115 bp downstream
Tssr91983	transcription start site region 91983	1091 bp downstream