rs256001098 SNP Detail

Summary

• ID
  rs256001098
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:90292167 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGAGTGGC CTATTCTAGG
  CACTTTGCAT AAATGGAAGC GTAAGTACTT GTCTTTGGGA GCGTGGTGAC ACACACCTTT
  AACCCAGCAT GTGGAAGGCA GAAGCAGGAG GATCTCTGTA AATCTGAGAC CAGCTGTTCT
  ATATAATGCC GTCCAGGCCA GCCAGGGCTA CATAGTGAGG CCTTGTCATT AAAAATAATA
  W
  TAAAATAAAT TAAATGTTCT TTCTGTATGT GTGACTTATT CCACTTTGTA AAATACTGTG
  TGTGACTTAT TTCACTTCAC AGATTTACAA GATACATTTA CATTATAACA TACTTGAAGA
  TTTCACTCCA CATGGCAGAA TAAAACTCTA TTGTGTAGGC TGTAGATAAA GCCATATTTT
  GTTCATGTGT GTGACAATGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320390731	CHEV_2_90301980	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256001098					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90292167 () rs orientation: forward

Symbol	Name	Function Class
Ptprj	protein tyrosine phosphatase receptor type J	within coordinates
Rr55090	regulatory region 55090	210 bp proximal
Rr373523	regulatory region 373523	15 bp upstream
Tssr25089	transcription start site region 25089	1105 bp upstream
Tssr25090	transcription start site region 25090	1077 bp upstream
Tssr25091	transcription start site region 25091	918 bp upstream
Tssr25092	transcription start site region 25092	1284 bp downstream