rs256004417 SNP Detail

Summary

• ID
  rs256004417
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:48050733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTTTCTT TGCAGATGGC
  ATCGACTCCC CCAGTCCATT TCCTGGGCCT ACGTGCCCAC CTCGCCACTT AAGCTGGCTG
  AAGTCATCAG TAGGGGTCCA GTTTGTGCAG GCTGCTAATC CTGTTTGGAG GAGTGGGTGG
  GGAACAGCGG CCACAACTTG TGTGGGCAGC CTTAGCTGGC ACTCATCAAA TGTTAGCATG
  Y
  CACTGCCTCC CTTGTACTAC ACAGGACATC TTTTTTTTTT TTTTTCACTA ACTCACAGGT
  TCACCAATCA ACATGTGTAA GTCTTGGGGG CACCAATGGC CTCCTCTCCA AATTAATTAA
  CAAGACATTT CCTTCCTTTC CCTATGGCTA GGGAGACCAC TCCAATGGTT TTTGGGTTGT
  TGTTGTTGCT GCTGCTTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361430133	MGP_WTSI_4_48063605	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256004417					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361430133	MGP_WTSI_4_48063605	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48050733 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14280	CpG island 14280	1639 bp distal
Cpgi14281	CpG island 14281	757 bp proximal
Nr4a3	nuclear receptor subfamily 4, group A, member 3	Intron
Rr591932	regulatory region 591932	1386 bp distal
Rr591933	regulatory region 591933	746 bp proximal
Tssr37207	transcription start site region 37207	1670 bp downstream
Tssr37208	transcription start site region 37208	1641 bp downstream
Tssr37209	transcription start site region 37209	767 bp downstream
Tssr37210	transcription start site region 37210	44 bp upstream
Tssr37211	transcription start site region 37211	521 bp upstream
Tssr37212	transcription start site region 37212	544 bp upstream
Tssr37213	transcription start site region 37213	634 bp upstream
Tssr37214	transcription start site region 37214	646 bp upstream
Tssr37215	transcription start site region 37215	697 bp upstream
Tssr37216	transcription start site region 37216	790 bp upstream
Tssr41635	transcription start site region 41635	1670 bp upstream
Tssr41636	transcription start site region 41636	1626 bp upstream