rs256012817 SNP Detail

Summary

• ID
  rs256012817
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:40516763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTATGAA AGATCTATGA
  AAACAGTAAC GTACAATAAA TCCAATTCTA AGATTCTGTG CATGCCAATT CAACTATAAT
  GATTTGAGAA TGAGGGGGCT AAAAAGCTCC AGTCTCTGTT TTTTAACCCC CCCACACACA
  CACACACACA AATACAAATA ACCTTGCTTT TCATGGTACT TAGGATCATA ATTTGTTGGC
  Y
  CTTGCAGGCA GGGACTTGGT CATTAACTGC CTTTTCCGTA TCAAGGACCA TGTACTGTAC
  TGTCATAACC TCATATGGTC ATATAGCTAA TGTGATGTAA TAAGACAAGT GGCCTTCAGC
  CTTGTGCTAA GATTTGCTCA GCCATACCTT TCATGAGGTA ACTCTTTACA CCTTTAAAAA
  GATGTTCTGA TGGAGTAATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss393745564	MGP_WTSI_15_40484913	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256012817					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss393745564	MGP_WTSI_15_40484913	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:40516763 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7065	CpG island 7065	1003 bp proximal
Gm63080	predicted gene, 63080	within coordinates
Rr501588	regulatory region 501588	782 bp proximal
Rr501589	regulatory region 501589	1679 bp proximal
Tssr4586	transcription start site region 4586	1928 bp upstream
Tssr131170	transcription start site region 131170	1514 bp upstream
Tssr131171	transcription start site region 131171	1545 bp upstream
Tssr131172	transcription start site region 131172	1627 bp upstream
Tssr131173	transcription start site region 131173	1653 bp upstream
Tssr131174	transcription start site region 131174	1702 bp upstream
Tssr131175	transcription start site region 131175	1841 bp upstream
Tssr131176	transcription start site region 131176	1892 bp upstream
Tssr131177	transcription start site region 131177	1941 bp upstream
Tssr131178	transcription start site region 131178	1970 bp upstream
Zfpm2	zinc finger protein, multitype 2	1675 bp upstream