rs256012895 SNP Detail

Summary

• ID
  rs256012895
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173421032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTACAGT GAACAGGCTG
  GGGTCTTACA GTCTTTCTTT TTTTTTTTTT TCTTTTTTCT TTTTCTGCAG TACTGAGTAT
  TGATCCCAAG GCTCCACCCA GGAACAGAAC TCCCCCCCCC CCCCCCAGCA GCTGTCTTGT
  AGCCACAGTC TTGATAGGAG GCTGGTCTTG TCATAAGTGA ACAATTTCAT TTCAGTACCT
  R
  GATTCTACCT CAGAACACTA AATAGTTATT TTTATCTTTA TTATTTGTCT TTTGTTTGTG
  GGATTTTTTT GTTTTGTTTT GTTTTGTTTT GTTTTGTTTT GTTTTTTGAG ACAGGGTTTC
  TCTGTGTAGC CCTGAGTGCC CTGGAACTCA CTCTGTAGAC CAGGTTGACC TCAAAATCAG
  AGATCTGCCT GCCTCTGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320625294	CHEV_2_173404740	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256012895					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173421032 () rs orientation: forward

Symbol	Name	Function Class
Ankrd60	ankyrin repeat domain 60	966 bp upstream
Cpgi12846	CpG island 12846	424 bp distal
Gm74867	predicted gene, 74867	within coordinates
Gm74874	predicted gene, 74874	within coordinates
Ppp4r1l-ps	protein phosphatase 4, regulatory subunit 1-like, pseudogene	1960 bp downstream
Rr571985	regulatory region 571985	1290 bp distal
Rr571986	regulatory region 571986	408 bp distal
Tssr27995	transcription start site region 27995	1059 bp upstream
Tssr27996	transcription start site region 27996	1040 bp upstream
Tssr27997	transcription start site region 27997	1028 bp upstream
Tssr27998	transcription start site region 27998	961 bp upstream
Tssr27999	transcription start site region 27999	905 bp upstream