rs256013670 SNP Detail

Summary

• ID
  rs256013670
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51183048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTTAACC GAGGAGCATC
  TCTCCTGCCC CAAACAGTAT CTCTTTAACT ATACACACTC GACACTCAAA ACACCACTAA
  CCCAACATAA AACTGTACAC TAATTCATAC TGATCAATGG ACTGACTTTA ACAAGGACCC
  AAGTTCCATT ATGTTCCTCT CCTTCAGTAA AAGTTCCTAT TCAAAAAGGC ATTTAAACGC
  Y
  GCTCAATAAA TTGTGATTTC CCTACTTTTG AAATGTGTAA AATATGCCTC AGCCAAAACA
  CACTATTCAG CGTTATTGTT ATATAGCACA TGCAGTTCTA TCAGTCCAGA TTTTATTTAT
  ATTTAAAGTT CCGTTAAATT TAGAGATAAA CATAATTTTT CCTCCAAACC GAACTGCTTT
  GTCCACCAAA CTACCAATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357926563	MGP_WTSI_3_51079549	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256013670					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357926563	MGP_WTSI_3_51079549	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51183048 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930577N17Rik	RIKEN cDNA 4930577N17 gene			1132 bp upstream
Cpgi13132	CpG island 13132			250 bp proximal
Elf2	E74-like factor 2			Intron
				Noncoding-Transcript-Variant
Gm64767	predicted gene, 64767			637 bp upstream
Rr397655	regulatory region 397655			416 bp upstream
Rr576259	regulatory region 576259			147 bp proximal
Rr576260	regulatory region 576260			648 bp proximal
Rr576261	regulatory region 576261			1731 bp proximal
Rr576262	regulatory region 576262			1842 bp proximal
Tssr29048	transcription start site region 29048			630 bp upstream
Tssr29049	transcription start site region 29049			1220 bp upstream
Tssr33194	transcription start site region 33194			399 bp downstream
Tssr33195	transcription start site region 33195			1650 bp downstream
Tssr33196	transcription start site region 33196			1684 bp downstream
Tssr33197	transcription start site region 33197			1843 bp downstream