rs256056579 SNP Detail

Summary

• ID
  rs256056579
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:32126621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCGAAACG GAGAGCTCCG
  AGCACGTGAA CAGCTTGTGG AAACACACTG TGCTTTATTA AAAAGGGGAA AGGGAGCCCT
  AAGGATAGGA CAGTCAGTAT GCCCAACTTT GATGGCCGGT GAGCACGCCG CGCATGCGCG
  CCACTACCTC GCGCTCCGGC TGCGCACGCG CGTCTCAGAG TCTGTCGGCC GCGTAGACAC
  W
  ACTAGTTGAG CGTCGATCCG TGGCCGCTGC AGAGTAATCG AGCGGCCTCG CCCCCAACGG
  TCGATCCTGC CTGGCGGTTC GCAGGCCTGG CTCCACATGG GGAGCCACTC TACGGGACTC
  GAAGAAACGC TCGTAGGTTT TGGAGTGCCA GATTTGAGAG CCCTCCTGGG GTCTGGGATC
  CGGCTTAGGG GCGGCGCGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss353553915	MGP_WTSI_2_32092129	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs256056579					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353553915	MGP_WTSI_2_32092129	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32126621 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11499	CpG island 11499			within coordinates
Gm13610	predicted gene 13610			121 bp upstream
Pomt1	protein-O-mannosyltransferase 1			Intron
				mRNA-UTR
Rr554847	regulatory region 554847			226 bp distal
Rr554848	regulatory region 554848			9 bp distal
Rr554849	regulatory region 554849			795 bp proximal
Tssr17254	transcription start site region 17254			14 bp downstream
Tssr17255	transcription start site region 17255			within coordinates
Tssr17256	transcription start site region 17256			22 bp upstream
Tssr17257	transcription start site region 17257			688 bp upstream
Tssr23466	transcription start site region 23466			246 bp upstream
Tssr23467	transcription start site region 23467			236 bp upstream
Tssr23468	transcription start site region 23468			216 bp upstream