rs256057046 SNP Detail

Summary

• ID
  rs256057046
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127031732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGTGGGTGT GGGGGCGCCG
  GGCTCACCTA CCTCTCGTCA GCGCCGCCAT TGCCGGTCAC ATGACTGAGG CTGTTGCTGG
  GATGACGGTC CGGGCCTTAG CAACAAGGGG CGGGGGGGTG GGGGGGAGAC CCTGAGAAGG
  TGGAAGGGGA TGCCGGGGTG CAGACCGAGA GAAAGGAAGG GAGAGCACCC CTCCCCTTGG
  Y
  GGGTGATAAT CACCGTTTCC TTTGACCCCC TCCTACCCGG GAGCCCCTGC CTCTGCCCCA
  AAACAAAAAT GGAGGCGCAG TTCCAGTCTT TGGAGGGAGG GGTGGCGTCA TGTAGCCGAG
  GGTAGGAGGT TAAATCCCTT AGAAACGCCA CTCTCTTGGC TTCCCCCTCC CGGAGGAGAC
  CTCTCCCCAC TTCTTTCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382180344	MGP_WTSI_10_126632919	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256057046					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382180344	MGP_WTSI_10_126632919	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127031732 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2345	CpG island 2345	96 bp distal
Dtx3	deltex 3, E3 ubiquitin ligase	135 bp upstream
F420014N23Rik	RIKEN cDNA F420014N23 gene	within coordinates
Gm57007	predicted gene, 57007	within coordinates
Pip4k2c	phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	1204 bp downstream
Rr224404	regulatory region 224404	within coordinates
Tssr96170	transcription start site region 96170	565 bp downstream
Tssr99736	transcription start site region 99736	641 bp upstream
Tssr99737	transcription start site region 99737	124 bp upstream