rs256058260 SNP Detail

Summary

• ID
  rs256058260
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60236662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGCAGCT GCAAGGGCTG
  GGAGGGGTTG GGACATGGGC TGGGTGGCAG GTGGGTGGAG AGCACTGGAT GCCCTCAGTC
  AGCTGTGCCC AGGAGCCAGG ACTTAGGCCC CGGAGTTGCT GGTGAGTGCC CAGGTTGGTC
  AAGGGAGTTA GGAGGCTAGC GGGGGCACTG GGTGGCCATG CTCCCCGATT TCCCACAGTT
  G
  CAGGGAGGGC CTTGTTGGGA TAGAGCCTCC CCTGTGGCCT GGCTTTGGTG TTAGAACCCG
  AGGGAGATAC AAAATCAGCT GGGGAAGTGG AAGCTCTTCT CTCCCTGCCT CAGGTCCAGT
  ATTTGAAAAT TCATTTTGAA ACCTTTGGAA TCAAGTTTGC CTGGCATTTT GTAATATCTG
  TTTCTCCTCT GTGCTCCAAA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323325385	CHEV_10_59863631	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256058260					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60236662 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Gm17455	predicted gene, 17455	within coordinates
Rr228097	regulatory region 228097	within coordinates
Tssr93633	transcription start site region 93633	1111 bp downstream
Tssr93634	transcription start site region 93634	1078 bp downstream
Tssr93635	transcription start site region 93635	1007 bp downstream
Tssr93636	transcription start site region 93636	119 bp downstream