rs256060662 SNP Detail

Summary

• ID
  rs256060662
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:35904912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GCAGGCCCAG AAGCTGAGTG GGGCCTCGGC CCTCAGCTCG TCTGATCCGC
  R
  CTCCCGGGAG CTCCCGGTCT TCTCCGGTCG ACTCGCGACC GCTCGGGCGG           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss400265237	MGP_WTSI_18_35931513	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	A	A	G	G	A	A	A	A	A	A	A	A	A	G	G	A	G	A	G	A	G	G	A	G	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs256060662					SNP	A	G	A	A	G	G	A	A	A	A	A	A	A	A	A	G	G	A	G	A	G	A	G	G	A	G	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400265237	MGP_WTSI_18_35931513	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35904912 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9842	CpG island 9842	within coordinates
Gm16490	predicted gene 16490	1191 bp downstream
Rr393530	regulatory region 393530	within coordinates
Rr535947	regulatory region 535947	291 bp distal
Rr535948	regulatory region 535948	within coordinates
Tssr150551	transcription start site region 150551	491 bp downstream
Tssr150552	transcription start site region 150552	372 bp downstream
Tssr150553	transcription start site region 150553	301 bp downstream
Tssr150554	transcription start site region 150554	260 bp downstream
Tssr150555	transcription start site region 150555	244 bp downstream
Tssr150556	transcription start site region 150556	188 bp downstream
Tssr150557	transcription start site region 150557	149 bp downstream
Tssr150558	transcription start site region 150558	118 bp downstream
Tssr150559	transcription start site region 150559	38 bp upstream
Tssr150560	transcription start site region 150560	259 bp upstream
Tssr150561	transcription start site region 150561	286 bp upstream
Tssr150562	transcription start site region 150562	1942 bp upstream
Ube2d2a	ubiquitin-conjugating enzyme E2D 2A	within coordinates