rs256088554 SNP Detail

Summary

• ID
  rs256088554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:63081342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAATTGT TATTTTTTTT
  CTAAAGTTCC ATTATTGTTT TTATTTATGT TACAGATAAG AACTTCCATT TTCTGTTGAT
  GTGGAGGTAG GTATCAGATT GTTCTGTGGG GGACTGGAAG ATTATGTTTC TGCAGTTGGC
  TGGATACTTG CTTGTTTGGG CATTGGACAC ATGCCTTATT TACTGTTCTC ATTAAATGTA
  Y
  GTAAACACGA AAACCTAATT TCATTAGAGT ACTTATATAG CAGAGTTAAA GCCAGTTACT
  GTTTTAAGTT TTGCAAAGAA TAGTAGAAGG TGATGTCATT TCCTAAACAT TTGTATATGG
  CCCTTTAAAA CTGAGAGAAC TGACTGTCAC CCCAAGCATA TTATAAGTAT TAAACAAGTG
  CAGTCCTCAT TTTAGCTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380635805	MGP_WTSI_10_62708311	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256088554					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380635805	MGP_WTSI_10_62708311	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:63081342 () rs orientation: forward

Symbol	Name	Function Class
1700120B22Rik	RIKEN cDNA 1700120B22 gene	1410 bp upstream
Cpgi1647	CpG island 1647	985 bp distal
Gm66860	predicted gene, 66860	1948 bp downstream
Herc4	hect domain and RLD 4	within coordinates
Rr432766	regulatory region 432766	1630 bp distal
Rr432767	regulatory region 432767	947 bp distal
Rr432768	regulatory region 432768	444 bp distal
Rr432769	regulatory region 432769	597 bp distal
Rr432770	regulatory region 432770	1950 bp proximal
Tssr93750	transcription start site region 93750	1792 bp downstream
Tssr93751	transcription start site region 93751	1717 bp downstream
Tssr93752	transcription start site region 93752	1599 bp downstream
Tssr93753	transcription start site region 93753	1577 bp downstream
Tssr93754	transcription start site region 93754	1550 bp downstream
Tssr97910	transcription start site region 97910	1891 bp upstream
Tssr97911	transcription start site region 97911	1393 bp upstream