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rs256098406 SNP Detail
Summary
  • ID
    rs256098406
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr12:26495255 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAAATTGGCA TAGTTAGCAA
AAAATAACCC AGTTTCTCAA GGGGAACAAA AAGGAAAAAG GAAATGTGGG ATTCACAGTA
AAATCCACAC AAAAATTCAA ATATAAATGA AATGCTGGTT CTTAGGGGTC ACTGGACCTT
GCTCCTCTGA GAACCGAACT CTCTCCTGTG GAGGACGATT ATCTGCTGCA TAATTTTACT
Y
CCTTTTTAGT TCAGTCAAAC TGAAAGAAAA ATAAACAGAC TGTATTCTAA TAACAACAGT
CCGTAGATAG CCAGAAGATG TAGCTTGTTG AAGGATAGCT GGGCGTGAAT GTCCCTGTAG
CTGGTCGGAG TTTCCTTCCC ATCTCAGCCT CACCAGTCCA GCTTCAGGTC AGCTTTACTC
CACACATACT TTCCGCCACG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss385360843 MGP_WTSI_12_27130121 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs256098406 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss385360843 MGP_WTSI_12_27130121 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:26495255 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Rr464136 regulatory region 464136 867 bp distal
Rr464137 regulatory region 464137 1119 bp proximal
Rsad2 radical S-adenosyl methionine domain containing 2 within coordinates
Tssr112998 transcription start site region 112998 1503 bp downstream
Tssr112999 transcription start site region 112999 1438 bp downstream
Tssr113000 transcription start site region 113000 1337 bp downstream
Tssr113001 transcription start site region 113001 850 bp downstream
Tssr113002 transcription start site region 113002 826 bp downstream
Tssr113003 transcription start site region 113003 738 bp downstream
Tssr113004 transcription start site region 113004 687 bp downstream
Tssr113005 transcription start site region 113005 678 bp downstream
Tssr113006 transcription start site region 113006 311 bp downstream
Tssr113007 transcription start site region 113007 221 bp downstream
Tssr113008 transcription start site region 113008 53 bp downstream
Tssr113009 transcription start site region 113009 38 bp downstream
Tssr113010 transcription start site region 113010 98 bp upstream
Tssr115905 transcription start site region 115905 1734 bp upstream
Tssr115906 transcription start site region 115906 1614 bp upstream
Tssr115907 transcription start site region 115907 1555 bp upstream
Tssr115908 transcription start site region 115908 1511 bp upstream
Tssr115909 transcription start site region 115909 1427 bp upstream
Tssr115910 transcription start site region 115910 1373 bp upstream
Tssr115911 transcription start site region 115911 1325 bp upstream
Tssr115912 transcription start site region 115912 1311 bp upstream
Tssr115913 transcription start site region 115913 1276 bp upstream
Tssr115914 transcription start site region 115914 1228 bp upstream
Tssr115915 transcription start site region 115915 1185 bp upstream
Tssr115916 transcription start site region 115916 1144 bp upstream
Tssr115917 transcription start site region 115917 1094 bp upstream
Tssr115918 transcription start site region 115918 1079 bp upstream
Tssr115919 transcription start site region 115919 1048 bp upstream
Tssr115920 transcription start site region 115920 1016 bp upstream
Tssr115921 transcription start site region 115921 640 bp upstream
Tssr115922 transcription start site region 115922 615 bp upstream
Tssr115923 transcription start site region 115923 522 bp upstream
Tssr115924 transcription start site region 115924 462 bp upstream
Tssr115925 transcription start site region 115925 447 bp upstream
Tssr115926 transcription start site region 115926 96 bp upstream
Tssr115927 transcription start site region 115927 55 bp upstream
Tssr115928 transcription start site region 115928 1916 bp downstream
Tssr115929 transcription start site region 115929 1946 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory