rs256099792 SNP Detail

Summary

• ID
  rs256099792
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:91737330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGCATTT TGGACTTGAG
  GTTTTCATAT ACAGCATGCT CCTTGAATCC ACTGAGATGA GAGCTGCTGA CAGCAAGCTC
  CCAGACAAGA GGTTTGTTCC GGGGTAAATA GACTTCCCAC CCAGTGAGTT TCTCTGGCTG
  GTTTCATAGA CAGTGTCACA TTCCCACCGC CTTTCTGACA GCCTGTGTCT GCCTCCCTCC
  Y
  TTTGTGTGTC TCAGCCATTT GGCTTGTGTT TGGACCCTGG ATCCACTCTA CACTAACTAC
  CTGTACACCT TCACTTAACC TTCTAATGCC TGGGTTCCTC CTCTGTAATG TATATGGAGT
  CCTCCCCTGC AGCTAGGGGG ATCCCATCAG TTCTTACAAA GTGCTCAAAG CCGTGCTTGG
  CATATAGGCT GTGTGGATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369190352	MGP_WTSI_6_91710343	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256099792					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369190352	MGP_WTSI_6_91710343	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:91737330 () rs orientation: forward

Symbol	Name	Function Class
Grip2	glutamate receptor interacting protein 2	1160 bp downstream
Rr141761	regulatory region 141761	1930 bp distal
Rr379752	regulatory region 379752	1164 bp downstream
Slc6a6	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	1286 bp downstream
Tssr57760	transcription start site region 57760	1947 bp downstream
Tssr57761	transcription start site region 57761	1930 bp downstream
Tssr57762	transcription start site region 57762	1889 bp downstream
Tssr57763	transcription start site region 57763	1865 bp downstream
Tssr57764	transcription start site region 57764	1841 bp downstream
Tssr57765	transcription start site region 57765	1808 bp downstream
Tssr57766	transcription start site region 57766	1782 bp downstream
Tssr57767	transcription start site region 57767	1711 bp downstream
Tssr57768	transcription start site region 57768	1701 bp downstream
Tssr57769	transcription start site region 57769	1501 bp downstream
Tssr57770	transcription start site region 57770	1390 bp downstream
Tssr62095	transcription start site region 62095	1997 bp upstream
Tssr62096	transcription start site region 62096	1715 bp upstream
Tssr62097	transcription start site region 62097	1508 bp upstream