rs256100768 SNP Detail

Summary

• ID
  rs256100768
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130267980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAGACTT TGCTTCTGCT
  CATAGCCAAA CTTTTAAATG GAATTGTGTT GTTTGCAATG TAATGCATTT TCTAGACAGA
  GGATGCCTTG TGGTAATTTC TAGAGCTCTG TTACATTTGT TTAGTCATGA TTTCTCTTAG
  ACACATGTAC AATATGAAGC AACTGAAAAT ACTAATGAGC AGAGTGTGGT GTCCCATCCA
  Y
  AACCTCATAT AACACATAGC CCTTGGCATG TGGAGGCTGG AAGACTAGGA TTGCCAGTTC
  AGCCTTAGAT GGATATATAT CAGAGGCCAG CCTTGGCAAG ATGAGACTCT GTCCCCAAAT
  ACATATTTAA AAGGCTAAAA AATAATAAAT ATAAAATATT AGCTATTGTA AAAATACCTG
  TTGCTTACCC AGACTTTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi5/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss355662297	MGP_WTSI_2_130251796	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi5/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs256100768					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355662297	MGP_WTSI_2_130251796	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130267980 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12264	CpG island 12264	1135 bp distal
Pced1a	PC-esterase domain containing 1A	1288 bp upstream
Rr565055	regulatory region 565055	1931 bp distal
Rr565056	regulatory region 565056	1685 bp distal
Rr565057	regulatory region 565057	883 bp distal
Tssr20210	transcription start site region 20210	1667 bp downstream
Tssr26295	transcription start site region 26295	1767 bp upstream
Tssr26296	transcription start site region 26296	1754 bp upstream
Tssr26297	transcription start site region 26297	1332 bp upstream
Tssr26298	transcription start site region 26298	1270 bp upstream
Vps16	VSP16 CORVET/HOPS core subunit	within coordinates